Transcript: GRIK1-AS1:3

Basic information

LNCipedia transcript ID: GRIK1-AS1:3 
LNCipedia gene ID: GRIK1-AS1
Location (hg38): chr21:29748834-29764004
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 919 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT081649
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -96.2685 non-coding 
CPAT coding probability 2.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GRIK1-AS1:3 yes no no no

Available literature

  1. Hughes (2014), CEBPA-regulated lncRNAs, new players in the study of acute myeloid leukemia., J Hematol Oncol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BACH1-2:7
4.0 GRIK1-AS1:3
4.1 GRIK1-AS1:3
5.0 GRIK1-AS1:3
5.1 GRIK1-AS1:3
5.2 GRIK1-AS1:3