Transcript: GMDS-DT:108

Basic information

LNCipedia transcript ID: GMDS-DT:108 
LNCipedia gene ID: GMDS-DT
Location (hg38): chr6:2248896-2270014
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 432 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00011640
Alternative gene names: XLOC_005126; linc-WRNIP1-3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.583 non-coding 
CPAT coding probability 0.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GMDS-DT:108 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-WRNIP1-2:18
3.1 lnc-WRNIP1-2:18
4.0 GMDS-AS1:21
4.1 GMDS-AS1:21
5.0 GMDS-AS1:21
5.1 GMDS-DT:38
5.2 GMDS-DT:108