Transcript: GLIDR:17

Basic information

LNCipedia transcript ID: GLIDR:17 
LNCipedia gene ID: GLIDR
Location (hg38): chr9:39803498-39809670
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 547 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00015598
Alternative gene names: XLOC_007690; linc-FAM75A7-3; MGC21881; TCONS_00015562


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.832 non-coding 
CPAT coding probability 1.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GLIDR:17 no no no no

Available literature

  1. Zhang (2017), Increased expression of long non-coding RNA GLIDR in prostate cancer., Cancer Biomark
  2. Zhang (2013), A long non-coding RNA signature in glioblastoma multiforme predicts survival., Neurobiol. Dis.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM75A4-2:3
3.1 lnc-FAM75A4-2:3
4.0 GLIDR:17
4.1 GLIDR:17
5.0 GLIDR:17
5.1 GLIDR:17
5.2 GLIDR:17