Transcript: GHET1:5

Basic information

LNCipedia transcript ID: GHET1:5 
HGNC Gene Symbol: GHET1    
HGNC Full Gene Name: gastric carcinoma proliferation enhancing transcript 1
Ensembl Gene ID: ENSG00000281189
Ensembl Transcript ID: ENST00000627071
Location (hg38): chr7:148987527-148989432
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1906 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000627071.1
Alternative gene names: ENSG00000281189.1; GHET1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -9.7387 non-coding 
CPAT coding probability 2.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GHET1:5 no no no no

Available literature

  1. Yang (2014), Long non-coding RNA GHET1 promotes gastric carcinoma cell proliferation by increasing c-Myc mRNA stability., FEBS J.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-ZNF398-4:1
4.1 lnc-ZNF398-4:1
5.0 lnc-ZNF398-4:1
5.1 GHET1:2
5.2 GHET1:5