Transcript: GCSAML-AS1:2

Basic information

LNCipedia transcript ID: GCSAML-AS1:2 
LNCipedia gene ID: GCSAML-AS1
Location (hg38): chr1:247524679-247526752
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1638 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000420469.1; RP11-978I15.9-001; OTTHUMT00000097749.1; NONHSAT010783
Alternative gene names: ENSG00000227135.1; RP11-978I15.9; OTTHUMG00000040649.1; GCSAML-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.9287 non-coding 
CPAT coding probability 3.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GCSAML-AS1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OR2C3-1:1
4.0 GCSAML-AS1:2
4.1 GCSAML-AS1:2
5.0 GCSAML-AS1:2
5.1 GCSAML-AS1:2
5.2 GCSAML-AS1:2