Transcript: GATA6-AS1:2

Basic information

LNCipedia transcript ID: GATA6-AS1:2 
HGNC Gene Symbol: GATA6-AS1    
HGNC Full Gene Name: GATA6 antisense RNA 1 (head to head)
Ensembl Gene ID: ENSG00000266010
Ensembl Transcript ID: ENST00000579431
Location (hg38): chr18:22167255-22168418
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 481 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000579431.1; RP11-627G18.3-003; OTTHUMT00000446375.1; NONHSAT058609
Alternative gene names: ENSG00000266010.1; RP11-627G18.3; OTTHUMG00000179440.1; GATA6-AS1; locus5689; BM742401


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -65.0916 non-coding 
CPAT coding probability 8.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GATA6-AS1:2 no no no no

Available literature

  1. Wang (2016), Epigenetic silencing of tumor suppressor long non-coding RNA BM742401 in chronic lymphocytic leukemia., Oncotarget
  2. Park (2013), A known expressed sequence tag, BM742401, is a potent lincRNA inhibiting cancer metastasis., Exp. Mol. Med.
  3. Sigova (2013), Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-863N1.2.1-4:2
4.0 GATA6-AS1:2
4.1 GATA6-AS1:2
5.0 GATA6-AS1:2
5.1 GATA6-AS1:2
5.2 GATA6-AS1:2