Transcript: GATA2-AS1:16

Basic information

LNCipedia transcript ID: GATA2-AS1:16 
LNCipedia gene ID: GATA2-AS1
Location (hg38): chr3:128489244-128497933
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1953 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000244300.2|HBMT00000983309.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -3.161 non-coding 
CPAT coding probability 5.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GATA2-AS1:16 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 GATA2-AS1:16
5.0 GATA2-AS1:16
5.1 GATA2-AS1:16
5.2 GATA2-AS1:16