Transcript: GASAL1:21

Basic information

LNCipedia transcript ID: GASAL1:21 
LNCipedia gene ID: GASAL1
Location (hg38): chr8:102806822-102809975
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2774 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00014499; NONHSAT128112
Alternative gene names: XLOC_006894; linc-ATP6V1C1-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.0637 non-coding 
CPAT coding probability 21.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GASAL1:21 no no no no

Available literature

  1. Gasri-Plotnitsky (2017), A novel lncRNA, GASL1, inhibits cell proliferation and restricts E2F1 activity., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KB-1507C5.2.1-3:2
3.1 lnc-KB-1507C5.2.1-3:4
4.0 lnc-KB-1507C5.2.1-3:4
4.1 lnc-KB-1507C5.2.1-3:4
5.0 lnc-KB-1507C5.2.1-3:4
5.1 GASAL1:6
5.2 GASAL1:21