Transcript: GAS1RR:5

Basic information

LNCipedia transcript ID: GAS1RR:5 
LNCipedia gene ID: GAS1RR
RefSeq ID: NR_049794
Location (hg38): chr9:86948698-87002033
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4388 bp
Exons: 7
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_049794; NR_049794.1
Alternative gene names: LncRNA-Hh; GAS1RR


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.6739 non-coding 
CPAT coding probability 0.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GAS1RR:5 no no no no

Available literature

  1. Zhou (2016), LncRNA-Hh Strengthen Cancer Stem Cells Generation in Twist-Positive Breast Cancer via Activation of Hedgehog Signaling Pathway., Stem Cells


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C9orf170-1:9
4.0 GAS1RR:5
4.1 GAS1RR:5
5.0 GAS1RR:5
5.1 GAS1RR:5
5.2 GAS1RR:5