Transcript: GAPLINC:2
Basic information
LNCipedia transcript ID: GAPLINC:2
HGNC Gene Symbol: GAPLINC
HGNC Full Gene Name:
gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA
Ensembl Gene ID:
ENSG00000266835
Ensembl Transcript ID:
ENST00000581029
Location (hg38): chr18:3466250-3473203
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 613 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000581029.1; RP11-838N2.4-002; OTTHUMT00000441757.1; NONHSAT056992; ENST00000581029.5
Alternative gene names: ENSG00000266835.1; RP11-838N2.4; OTTHUMG00000178331.2; ENSG00000266835.5; GAPLINC; TCONS_00026238
RNA sequence:
Structure:
Protein coding potential
In stringent set: yes
Locus conservation
Locus conservation? | ||||
---|---|---|---|---|
GAPLINC:2 | no | no | no | no |
Available literature
- Liu (2016), Hypoxia Promotes Gastric Cancer Malignancy Partly through the HIF-1α Dependent Transcriptional Activation of the Long Non-coding RNA GAPLINC., Front Physiol
- Wu (2016), Long Non-Coding RNA ucoo2kmd.1 Regulates CD44-Dependent Cell Growth by Competing for miR-211-3p in Colorectal Cancer., PLoS ONE
- Huang (2015), Long non-coding RNA TUG1 is up-regulated in hepatocellular carcinoma and promotes cell growth and apoptosis by epigenetically silencing of KLF2., Mol. Cancer
- Xie (2015), Decreased long noncoding RNA SPRY4-IT1 contributing to gastric cancer cell metastasis partly via affecting epithelial-mesenchymal transition., J Transl Med
- Xie (2015), Long noncoding RNA HOXA-AS2 promotes gastric cancer proliferation by epigenetically silencing P21/PLK3/DDIT3 expression., Oncotarget
- Hu (2014), Long noncoding RNA GAPLINC regulates CD44-dependent cell invasiveness and associates with poor prognosis of gastric cancer., Cancer Res.
LNCipedia transcript ID history
LNCipedia version | LNCipedia transcript ID |
---|---|
3.1 | lnc-TGIF1-1:1 |
4.0 | GAPLINC:2 |
4.1 | GAPLINC:2 |
5.0 | GAPLINC:2 |
5.1 | GAPLINC:2 |
5.2 | GAPLINC:2 |