Transcript: GACAT2:1

Basic information

LNCipedia transcript ID: GACAT2:1 
HGNC Gene Symbol: GACAT2    
HGNC Full Gene Name: gastric cancer associated transcript 2
Ensembl Gene ID: ENSG00000265962
Ensembl Transcript ID: ENST00000579368
RefSeq ID: NR_120598
Location (hg38): chr18:8695856-8707621
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 818 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000579368.1; RP11-674N23.1-001; OTTHUMT00000444099.1; NONHSAT057182; NR_120598; NR_120598.1
Alternative gene names: ENSG00000265962.1; RP11-674N23.1; OTTHUMG00000178955.1; GACAT2; HMlincRNA717


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -107.4908 non-coding 
CPAT coding probability 26.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GACAT2:1 yes no no no

Available literature

  1. Chen (2014), Long noncoding RNA HMlincRNA717 and AC130710 have been officially named as gastric cancer associated transcript 2 (GACAT2) and GACAT3, respectively., Tumour Biol.
  2. Li (2014), Non-coding RNAs and gastric cancer., World J. Gastroenterol.
  3. Shao (2014), Low expression of lncRNA-HMlincRNA717 in human gastric cancer and its clinical significances., Tumour Biol.
  4. Song (2013), Long non-coding RNA expression profile in human gastric cancer and its clinical significances., J Transl Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PPP4R1-7:1
4.0 GACAT2:1
4.1 GACAT2:1
5.0 GACAT2:1
5.1 GACAT2:1
5.2 GACAT2:1