Transcript: GABPB1-AS1:8

Basic information

LNCipedia transcript ID: GABPB1-AS1:8 
LNCipedia gene ID: GABPB1-AS1
Location (hg38): chr15:50355467-50358330
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2310 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000499624.2; CTD-3110H11.2-001; OTTHUMT00000418307.1; NONHSAT042409
Alternative gene names: ENSG00000244879.2; CTD-3110H11.2; OTTHUMG00000172396.1; ENSG00000244879.3; GABPB1-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.5385 non-coding 
CPAT coding probability 0.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GABPB1-AS1:8 no no no no

Available literature

  1. Chakravarty (2014), The oestrogen receptor alpha-regulated lncRNA NEAT1 is a critical modulator of prostate cancer., Nat Commun
  2. Tani (2014), Long non-coding RNAs as surrogate indicators for chemical stress responses in human-induced pluripotent stem cells., PLoS ONE
  3. Tani (2013), Identification of short-lived long non-coding RNAs as surrogate indicators for chemical stress response., Biochem. Biophys. Res. Commun.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-USP8-2:3
4.0 GABPB1-AS1:8
4.1 GABPB1-AS1:8
5.0 GABPB1-AS1:8
5.1 GABPB1-AS1:8
5.2 GABPB1-AS1:8