Transcript: GABPB1-AS1:15

Basic information

LNCipedia transcript ID: GABPB1-AS1:15 
LNCipedia gene ID: GABPB1-AS1
Location (hg38): chr15:50363801-50368279
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3624 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; NONCODE v4
Alternative transcript names: ENST00000500703; TCONS_00023262; NONHSAT042416
Alternative gene names: ENSG00000246338; XLOC_011248; linc-USP8;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.9058 non-coding 
CPAT coding probability 1.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GABPB1-AS1:15 no no no no

Available literature

  1. Chakravarty (2014), The oestrogen receptor alpha-regulated lncRNA NEAT1 is a critical modulator of prostate cancer., Nat Commun
  2. Tani (2014), Long non-coding RNAs as surrogate indicators for chemical stress responses in human-induced pluripotent stem cells., PLoS ONE
  3. Tani (2013), Identification of short-lived long non-coding RNAs as surrogate indicators for chemical stress response., Biochem. Biophys. Res. Commun.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-USP8-1:1
3.1 lnc-USP8-2:8
4.0 GABPB1-AS1:15
4.1 GABPB1-AS1:15
5.0 GABPB1-AS1:15
5.1 GABPB1-AS1:15
5.2 GABPB1-AS1:15