Transcript: FRGCA:5

Basic information

LNCipedia transcript ID: FRGCA:5 
LNCipedia gene ID: FRGCA
Location (hg38): chr21:43133582-43141650
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 7503 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000236663.1|HBMT00000927663.1
Alternative gene names: LncRNA-AP001631.9


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 33.8852 non-coding 
CPAT coding probability 0.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FRGCA:5 no no no no

Available literature

  1. Cai (2015), LncRNA-AP001631.9 promotes cell migration in gastric cancer., Int J Clin Exp Pathol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 FRGCA:5
5.0 FRGCA:5
5.1 FRGCA:5
5.2 FRGCA:5