Transcript: FRGCA:2

Basic information

LNCipedia transcript ID: FRGCA:2 
HGNC Gene Symbol: FRGCA    
HGNC Full Gene Name: FOXM1-regulated, gastric cancer associated
Ensembl Gene ID: ENSG00000236663
Ensembl Transcript ID: ENST00000424933
RefSeq ID: NR_133677
Location (hg38): chr21:43140523-43141092
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 422 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00028944; ENST00000424933.1; AP001631.9-001; OTTHUMT00000195569.1; NONHSAT147192; NR_133677.1
Alternative gene names: XLOC_014100; linc-U2AF1-5; ENSG00000236663.1; AP001631.9; OTTHUMG00000086845.1; FRGCA; LncRNA-AP001631.9


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.8302 non-coding 
CPAT coding probability 4.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FRGCA:2 no no no no

Available literature

  1. Cai (2015), LncRNA-AP001631.9 promotes cell migration in gastric cancer., Int J Clin Exp Pathol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AP001631.10.1-1:2
3.1 lnc-AP001631.10.1-1:2
4.0 FRGCA:2
4.1 FRGCA:2
5.0 FRGCA:2
5.1 FRGCA:2
5.2 FRGCA:2