Transcript: FRGCA:1

Basic information

LNCipedia transcript ID: FRGCA:1 
LNCipedia gene ID: FRGCA
Location (hg38): chr21:43140529-43141559
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 465 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00029155; NONHSAT082390
Alternative gene names: XLOC_014100; linc-U2AF1-5; LncRNA-AP001631.9


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.8302 non-coding 
CPAT coding probability 3.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FRGCA:1 no no no no

Available literature

  1. Cai (2015), LncRNA-AP001631.9 promotes cell migration in gastric cancer., Int J Clin Exp Pathol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AP001631.10.1-1:1
3.1 lnc-AP001631.10.1-1:1
4.0 FRGCA:1
4.1 FRGCA:1
5.0 FRGCA:1
5.1 FRGCA:1
5.2 FRGCA:1