Transcript: FOXP4-AS1:3

Basic information

LNCipedia transcript ID: FOXP4-AS1:3 
LNCipedia gene ID: FOXP4-AS1
RefSeq ID: NR_126416
Location (hg38): chr6:41523895-41547545
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 416 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_126416; NR_126416.1
Alternative gene names: ; FOXP4-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -41.135 non-coding 
CPAT coding probability 1.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FOXP4-AS1:3 no no no no

Available literature

  1. Li (2017), Long non-coding RNA FOXP4-AS1 is an unfavourable prognostic factor and regulates proliferation and apoptosis in colorectal cancer., Cell Prolif.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TFEB-1:6
4.0 FOXP4-AS1:3
4.1 FOXP4-AS1:3
5.0 FOXP4-AS1:3
5.1 FOXP4-AS1:3
5.2 FOXP4-AS1:3