Transcript: FOXCUT:7

Basic information

LNCipedia transcript ID: FOXCUT:7 
LNCipedia gene ID: FOXCUT
Location (hg38): chr6:1604222-1607348
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1470 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT106530
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -86.7806 non-coding 
CPAT coding probability 55.44% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
FOXCUT:7 no no no no

Available literature

  1. Kong (2014), The expression and functional role of a FOXC1 related mRNA-lncRNA pair in oral squamous cell carcinoma., Mol. Cell. Biochem.
  2. Pan (2014), A novel long non-coding RNA FOXCUT and mRNA FOXC1 pair promote progression and predict poor prognosis in esophageal squamous cell carcinoma., Int J Clin Exp Pathol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FOXC1-1:2
4.0 lnc-FOXC1-1:2
4.1 lnc-FOXC1-1:2
5.0 lnc-FOXC1-1:2
5.1 FOXCUT:2
5.2 FOXCUT:7