Transcript: FIRRE:1
Basic information
LNCipedia transcript ID: FIRRE:1
LNCipedia gene ID: FIRRE
RefSeq ID:
NR_026975
Location (hg38): chrX:131702650-131830643
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2928 bp
Exons: 13
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000427391.1; RP11-453F18__B.1-001; OTTHUMT00000058303.1; NONHSAT138539; NR_026975; NR_026975.1
Alternative gene names: ENSG00000213468.3; RP11-453F18__B.1; OTTHUMG00000022417.1; FIRRE; LINC01200; ENSG00000213468.4
RNA sequence:
Structure:
Protein coding potential
In stringent set: no
Locus conservation
| Locus conservation? |  |
 |
 |
 |
|---|---|---|---|---|
| FIRRE:1 | no | no | no | no |
Available literature
- Hacisuleyman (2016), Function and evolution of local repeats in the Firre locus., Nat Commun
- Qiu (2015), Long non-coding RNA LINC01296 is a potential prognostic biomarker in patients with colorectal cancer., Tumour Biol.
- Yang (2015), The lncRNA Firre anchors the inactive X chromosome to the nucleolus by binding CTCF and maintains H3K27me3 methylation., Genome Biol.
- Chapman (2014), Differentially methylated CpG island within human XIST mediates alternative P2 transcription and YY1 binding., BMC Genet.
- Hacisuleyman (2014), Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre., Nat. Struct. Mol. Biol.
- Luco (2013), The non-coding genome: a universe in expansion for fine-tuning the coding world., Genome Biol.
LNCipedia transcript ID history
| LNCipedia version | LNCipedia transcript ID |
|---|---|
| 3.1 | lnc-FRMD7-1:1 |
| 4.0 | FIRRE:1 |
| 4.1 | FIRRE:1 |
| 5.0 | FIRRE:1 |
| 5.1 | FIRRE:1 |
| 5.2 | FIRRE:1 |