Transcript: FGF13-AS1:2

Basic information

LNCipedia transcript ID: FGF13-AS1:2 
HGNC Gene Symbol: FGF13-AS1    
HGNC Full Gene Name: FGF13 antisense RNA 1
Ensembl Gene ID: ENSG00000226031
Ensembl Transcript ID: ENST00000438238
Location (hg38): chrX:138712107-138716617
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 849 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000438238; ENST00000438238.1; RP1-260J9.2-001; OTTHUMT00000058531.1; NONHSAT138767
Alternative gene names: ENSG00000226031; RP1-260J9.2; ENSG00000226031.1; OTTHUMG00000137416.1; FGF13-AS1; ENSG00000226031.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -69.5891 non-coding 
CPAT coding probability 1.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FGF13-AS1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SNURFL-1:2
3.1 lnc-SNURFL-1:2
4.0 FGF13-AS1:2
4.1 FGF13-AS1:2
5.0 FGF13-AS1:2
5.1 FGF13-AS1:2
5.2 FGF13-AS1:2