Transcript: FGF13-AS1:1

Basic information

LNCipedia transcript ID: FGF13-AS1:1 
HGNC Gene Symbol: FGF13-AS1    
HGNC Full Gene Name: FGF13 antisense RNA 1
Ensembl Gene ID: ENSG00000226031
Ensembl Transcript ID: ENST00000446383
Location (hg38): chrX:138711452-138716092
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 584 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000446383; ENST00000446383.1; RP1-260J9.2-002; OTTHUMT00000058532.1; NONHSAT138766; ENST00000446383.5
Alternative gene names: ENSG00000226031; RP1-260J9.2; ENSG00000226031.1; OTTHUMG00000137416.1; FGF13-AS1; ENSG00000226031.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -94.8189 non-coding 
CPAT coding probability 0.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FGF13-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SNURFL-1:1
3.1 lnc-SNURFL-1:1
4.0 FGF13-AS1:1
4.1 FGF13-AS1:1
5.0 FGF13-AS1:1
5.1 FGF13-AS1:1
5.2 FGF13-AS1:1