Transcript: FGD5-AS1:26

Basic information

LNCipedia transcript ID: FGD5-AS1:26 
LNCipedia gene ID: FGD5-AS1
Location (hg38): chr3:14877562-14948148
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3215 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000225733.1|ENCT00000300540.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 25.3772 non-coding 
CPAT coding probability 10.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FGD5-AS1:26 no no no no

Available literature

  1. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 FGD5-AS1:26
5.0 FGD5-AS1:26
5.1 FGD5-AS1:26
5.2 FGD5-AS1:26