Transcript: FAM83A-AS1:2

Basic information

LNCipedia transcript ID: FAM83A-AS1:2 
HGNC Gene Symbol: FAM83A-AS1    
HGNC Full Gene Name: FAM83A antisense RNA 1
Ensembl Gene ID: ENSG00000204949
Ensembl Transcript ID: ENST00000517519
RefSeq ID: NR_024479
Location (hg38): chr8:123201172-123202743
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1158 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000517519.1; RP11-539E17.4-002; OTTHUMT00000381746.1; NONHSAT128525; NR_024479; ENST00000517519.5; NR_024479.1
Alternative gene names: ENSG00000204949.4; RP11-539E17.4; OTTHUMG00000165086.1; FAM83A-AS1; ENSG00000204949.8; HCCC11


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.9304 non-coding 
CPAT coding probability 2.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM83A-AS1:2 no no no no

Available literature

  1. Yerushalmi (2014), Characterization of the human cumulus cell transcriptome during final follicular maturation and ovulation., Mol. Hum. Reprod.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C8orf76-1:2
4.0 FAM83A-AS1:2
4.1 FAM83A-AS1:2
5.0 FAM83A-AS1:2
5.1 FAM83A-AS1:2
5.2 FAM83A-AS1:2