Transcript: FAM66B:1

Basic information

LNCipedia transcript ID: FAM66B:1 
HGNC Gene Symbol: FAM66B    
HGNC Full Gene Name: family with sequence similarity 66 member B
Ensembl Gene ID: ENSG00000215374
Ensembl Transcript ID: ENST00000529456
RefSeq ID: NR_027423
Location (hg38): chr8:7301611-7355354
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1432 bp
Exons: 7
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000529456; ENST00000529456.1; FAM66B-001; OTTHUMT00000383775.1; NR_027423; NR_027423.1
Alternative gene names: ENSG00000215374; RP11-1195F20.2; ENSG00000215374.4; FAM66B; OTTHUMG00000165383.1; ENSG00000215374.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score 19.0977 non-coding 
CPAT coding probability 15.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
FAM66B:1 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF705G-1:1
3.1 lnc-ZNF705G-1:1
4.0 FAM66B:1
4.1 FAM66B:1
5.0 FAM66B:1
5.1 FAM66B:1
5.2 FAM66B:1