Transcript: FAM30A:11

Basic information

LNCipedia transcript ID: FAM30A:11 
HGNC Gene Symbol: FAM30A    
HGNC Full Gene Name: family with sequence similarity 30 member A
Ensembl Gene ID: ENSG00000226777
Ensembl Transcript ID: ENST00000628159
Location (hg38): chr14:105921488-105922672
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 353 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT040447; ENST00000628159.2
Alternative gene names: ENSG00000226777.7; KIAA0125; FAM30A


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.5156 non-coding 
CPAT coding probability 2.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM30A:11 no no no no

Available literature

  1. Nagase (1995), Prediction of the coding sequences of unidentified human genes. IV. The coding sequences of 40 new genes (KIAA0121-KIAA0160) deduced by analysis of cDNA clones from human cell line KG-1., DNA Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIAA0125-4:2
4.0 lnc-KIAA0125-4:2
4.1 lnc-KIAA0125-4:2
5.0 lnc-KIAA0125-4:2
5.1 FAM30A:6
5.2 FAM30A:11