Transcript: FAM215A:3

Basic information

LNCipedia transcript ID: FAM215A:3 
HGNC Gene Symbol: FAM215A    
HGNC Full Gene Name: family with sequence similarity 215 member A
Ensembl Gene ID: ENSG00000267496
Ensembl Transcript ID: ENST00000588043
Location (hg38): chr17:43917209-43917963
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 755 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000588043.3
Alternative gene names: ENSG00000267496.4; FAM215A; APR-2; LINC00530


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 111.0496 coding 
CPAT coding probability 42.23% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
FAM215A:3 no no no no

Available literature

  1. Fu (2016), Long non-coding RNAs, ASAP1-IT1, FAM215A, and LINC00472, in epithelial ovarian cancer., Gynecol. Oncol.
  2. Zhu (2000), Improved PCR-based subtractive hybridization strategy for cloning differentially expressed genes., BioTechniques


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 FAM215A:3
4.1 FAM215A:3
5.0 FAM215A:3
5.1 FAM215A:3
5.2 FAM215A:3