Transcript: FAM215A:2

Basic information

LNCipedia transcript ID: FAM215A:2 
LNCipedia gene ID: FAM215A
RefSeq ID: NR_026770
Location (hg38): chr17:43917208-43917987
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 780 bp
Exons: 1
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_026770; NR_026770.1
Alternative gene names: APR-2; LINC00530; FAM215A


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 111.0496 coding 
CPAT coding probability 42.19% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
FAM215A:2 no no no no

Available literature

  1. Fu (2016), Long non-coding RNAs, ASAP1-IT1, FAM215A, and LINC00472, in epithelial ovarian cancer., Gynecol. Oncol.
  2. Zhu (2000), Improved PCR-based subtractive hybridization strategy for cloning differentially expressed genes., BioTechniques


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-527L4.2.1-4:1
4.0 FAM215A:2
4.1 FAM215A:2
5.0 FAM215A:2
5.1 FAM215A:2
5.2 FAM215A:2