Transcript: FAM198B-AS1:29

Basic information

LNCipedia transcript ID: FAM198B-AS1:29 
LNCipedia gene ID: FAM198B-AS1
Location (hg38): chr4:158172734-158201834
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1229 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000248429.1|FTMT21500052891.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -110.2053 non-coding 
CPAT coding probability 2.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM198B-AS1:29 no no no no

Available literature

  1. Wang (2016), LncRNAs expression profiling in normal ovary, benign ovarian cyst and malignant epithelial ovarian cancer., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TMEM144-1:21
5.0 lnc-TMEM144-1:21
5.1 FAM198B-AS1:20
5.2 FAM198B-AS1:29