Transcript: FAM182A:40

Basic information

LNCipedia transcript ID: FAM182A:40 
HGNC Gene Symbol: FAM182A    
HGNC Full Gene Name: family with sequence similarity 182 member A
Ensembl Gene ID: ENSG00000125804
Ensembl Transcript ID: ENST00000439881
Location (hg38): chr20:26065647-26073812
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 614 bp
Exons: 5
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT079216; ENST00000439881.1
Alternative gene names: ENSG00000125804.9; FAM182A; ENSG00000125804.13


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.3347 non-coding 
CPAT coding probability 2.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM182A:40 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM182A-4:5
4.0 lnc-FAM182A-4:5
4.1 lnc-FAM182A-4:5
5.0 lnc-FAM182A-4:5
5.1 FAM182A:20
5.2 FAM182A:40