Transcript: FAM160A1-DT:24

Basic information

LNCipedia transcript ID: FAM160A1-DT:24 
LNCipedia gene ID: FAM160A1-DT
Location (hg38): chr4:151405520-151408853
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 527 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00009146; NONHSAT098757
Alternative gene names: XLOC_004122; linc-SH3D19


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -827.6611 non-coding 
CPAT coding probability 1.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM160A1-DT:24 no no no no

Available literature

  1. Zeng (2017), Comprehensive investigation of a novel differentially expressed lncRNA expression profile signature to assess the survival of patients with colorectal adenocarcinoma., Oncotarget
  2. Yang (2015), Genome-wide analysis of long noncoding RNA profile in human gastric epithelial cell response to Helicobacter pylori., Jpn. J. Infect. Dis.
  3. Zhu (2015), Microarray analysis of Long non-coding RNA expression profiles in human gastric cells and tissues with Helicobacter pylori Infection., BMC Med Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SH3D19-1:1
3.1 lnc-SH3D19-1:1
4.0 lnc-SH3D19-1:1
4.1 lnc-SH3D19-1:1
5.0 lnc-SH3D19-1:1
5.1 FAM160A1-DT:10
5.2 FAM160A1-DT:24