Transcript: FAM111A-DT:31

Basic information

LNCipedia transcript ID: FAM111A-DT:31 
LNCipedia gene ID: FAM111A-DT
Location (hg38): chr11:59130137-59136343
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4811 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00019641; NONHSAT021503
Alternative gene names: XLOC_009445; linc-GLYATL2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 25.6653 non-coding 
CPAT coding probability 1.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM111A-DT:31 no no no no

Available literature

  1. Kim (2017), Epidermal long non-coding RNAs are regulated by ultraviolet irradiation., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MPEG1-2:5
3.1 lnc-MPEG1-2:5
4.0 lnc-MPEG1-2:5
4.1 lnc-MPEG1-2:5
5.0 lnc-MPEG1-2:5
5.1 FAM111A-DT:15
5.2 FAM111A-DT:31