Transcript: EPB41L4A-AS1:8

Basic information

LNCipedia transcript ID: EPB41L4A-AS1:8 
LNCipedia gene ID: EPB41L4A-AS1
Location (hg38): chr5:112160865-112162311
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 361 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000224032.2|ENST00000508590.1
Alternative gene names: TIGA1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -165.4536 non-coding 
CPAT coding probability 0.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
EPB41L4A-AS1:8 yes no no no

Available literature

  1. Liu (2017), CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells., Science
  2. Ueno (1998), Cloning and tissue expression of cDNAs from chromosome 5q21-22 which is frequently deleted in advanced lung cancer., Hum. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 EPB41L4A-AS1:8
5.0 EPB41L4A-AS1:8
5.1 EPB41L4A-AS1:8
5.2 EPB41L4A-AS1:8