Transcript: EMX2OS:1

Basic information

LNCipedia transcript ID: EMX2OS:1 
LNCipedia gene ID: EMX2OS
Location (hg38): chr10:117489651-117545068
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1924 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000551288.1; EMX2OS-006; OTTHUMT00000406746.1
Alternative gene names: ENSG00000229847.2; EMX2OS; OTTHUMG00000019125.2; ENSG00000229847.4; NCRNA00045; EMX2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -118.7582 non-coding 
CPAT coding probability 0.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
EMX2OS:1 yes no no no

Available literature

  1. Imam (2015), The lncRNA NRON modulates HIV-1 replication in a NFAT-dependent manner and is differentially regulated by early and late viral proteins., Sci Rep
  2. Michelhaugh (2011), Mining Affymetrix microarray data for long non-coding RNAs: altered expression in the nucleus accumbens of heroin abusers., J. Neurochem.
  3. Spigoni (2010), Regulation of Emx2 expression by antisense transcripts in murine cortico-cerebral precursors., PLoS ONE
  4. Noonan (2003), Antisense transcripts at the EMX2 locus in human and mouse., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PDZD8-2:1
4.0 EMX2OS:1
4.1 EMX2OS:1
5.0 EMX2OS:1
5.1 EMX2OS:1
5.2 EMX2OS:1