Transcript: EGFR-AS1:1

Basic information

LNCipedia transcript ID: EGFR-AS1:1 
LNCipedia gene ID: EGFR-AS1
RefSeq ID: NR_047551
Location (hg38): chr7:55179750-55188949
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2821 bp
Exons: 2
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT120669; NR_047551; NR_047551.1
Alternative gene names: ; EGFR-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 133.928 coding 
CPAT coding probability 13.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
EGFR-AS1:1 yes no no no

Available literature

  1. Tan (2017), Long noncoding RNA EGFR-AS1 mediates epidermal growth factor receptor addiction and modulates treatment response in squamous cell carcinoma., Nat. Med.
  2. Qi (2016), The long noncoding RNA, EGFR-AS1, a target of GHR, increases the expression of EGFR in hepatocellular carcinoma., Tumour Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VOPP1-1:2
4.0 EGFR-AS1:1
4.1 EGFR-AS1:1
5.0 EGFR-AS1:1
5.1 EGFR-AS1:1
5.2 EGFR-AS1:1