Transcript: DSCR9:1

Basic information

LNCipedia transcript ID: DSCR9:1 
LNCipedia gene ID: DSCR9
Location (hg38): chr21:37208503-37221740
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1648 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000454482; NONHSAT082013
Alternative gene names: ENSG00000230366; DSCR9; NCRNA00038


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -30.8462 non-coding 
CPAT coding probability 56.85% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
DSCR9:1 no no no no

Available literature

  1. Takamatsu (2002), Identification of two novel primate-specific genes in DSCR., DNA Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TTC3-1:1
3.1 lnc-TTC3-1:1
4.0 DSCR9:1
4.1 DSCR9:1
5.0 DSCR9:1
5.1 DSCR9:1
5.2 DSCR9:1