Transcript: DNM3OS:4

Basic information

LNCipedia transcript ID: DNM3OS:4 
LNCipedia gene ID: DNM3OS
Location (hg38): chr1:172140321-172144794
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 568 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000417354.1; DNM3OS-001; OTTHUMT00000098131.2
Alternative gene names: ENSG00000230630.1; DNM3OS; OTTHUMG00000040855.2; MIR199A2HG; DNM3-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.2153 non-coding 
CPAT coding probability 0.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DNM3OS:4 no no no no

Available literature

  1. Yin (2010), TWISTing stemness, inflammation and proliferation of epithelial ovarian cancer cells through MIR199A2/214., Oncogene
  2. Lee (2009), Twist-1 regulates the miR-199a/214 cluster during development., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PIGC-1:1
4.0 DNM3OS:4
4.1 DNM3OS:4
5.0 DNM3OS:4
5.1 DNM3OS:4
5.2 DNM3OS:4