Transcript: DNAJC27-AS1:11

Basic information

LNCipedia transcript ID: DNAJC27-AS1:11 
HGNC Gene Symbol: DNAJC27-AS1    
HGNC Full Gene Name: DNAJC27 antisense RNA 1
Ensembl Gene ID: ENSG00000224165
Ensembl Transcript ID: ENST00000422449
Location (hg38): chr2:24972165-24972822
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 363 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002858; ENST00000422449; ENST00000422449.1; DNAJC27-AS1-002; OTTHUMT00000324693.1; NONHSAT069632
Alternative gene names: XLOC_001398; linc-EFR3B; ENSG00000224165; AC013267.2; ENSG00000224165.1; DNAJC27-AS1; OTTHUMG00000151981.2; ENSG00000224165.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -263.757 non-coding 
CPAT coding probability 14.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DNAJC27-AS1:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EFR3B-1:8
3.1 lnc-EFR3B-3:8
4.0 DNAJC27-AS1:11
4.1 DNAJC27-AS1:11
5.0 DNAJC27-AS1:11
5.1 DNAJC27-AS1:11
5.2 DNAJC27-AS1:11