Transcript: DNAJB8-AS1:4

Basic information

LNCipedia transcript ID: DNAJB8-AS1:4 
LNCipedia gene ID: DNAJB8-AS1
Location (hg38): chr3:128463943-128474550
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 590 bp
Exons: 4
Sources: NONCODE v4
Alternative transcript names: NONHSAT091764
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -53.2285 non-coding 
CPAT coding probability 38.73% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
DNAJB8-AS1:4 yes no no no

Available literature

  1. Bryzghalov (2016), Retroposition as a source of antisense long non-coding RNAs with possible regulatory functions., Acta Biochim. Pol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EEFSEC-1:5
4.0 DNAJB8-AS1:4
4.1 DNAJB8-AS1:4
5.0 DNAJB8-AS1:4
5.1 DNAJB8-AS1:4
5.2 DNAJB8-AS1:4