Transcript: DLEU1:40

Basic information

LNCipedia transcript ID: DLEU1:40 
LNCipedia gene ID: DLEU1
Location (hg38): chr13:50401226-50528534
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1487 bp
Exons: 7
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00021489; NONHSAT033852
Alternative gene names: XLOC_010390; linc-RNASEH2B-1; LEU1; XTP6; NCRNA00021; LINC00021; BCMS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -93.814 non-coding 
CPAT coding probability 1.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DLEU1:40 no no no no

Available literature

  1. Wolf (2001), B-cell neoplasia associated gene with multiple splicing (BCMS): the candidate B-CLL gene on 13q14 comprises more than 560 kb covering all critical regions., Hum. Mol. Genet.
  2. Liu (1997), Cloning of two candidate tumor suppressor genes within a 10 kb region on chromosome 13q14, frequently deleted in chronic lymphocytic leukemia., Oncogene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KCNRG-1:4
3.1 lnc-RNASEH2B-3:5
4.0 DLEU1:40
4.1 DLEU1:40
5.0 DLEU1:40
5.1 DLEU1:40
5.2 DLEU1:40