Transcript: DIO3OS:3

Basic information

LNCipedia transcript ID: DIO3OS:3 
HGNC Gene Symbol: DIO3OS    
HGNC Full Gene Name: DIO3 opposite strand upstream RNA
Ensembl Gene ID: ENSG00000258498
Ensembl Transcript ID: ENST00000554735
Location (hg38): chr14:101557304-101560411
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 3108 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000554735; ENST00000554735.1; DIO3OS-006; OTTHUMT00000414730.1; NONHSAT040038
Alternative gene names: ENSG00000258498; DIO3OS; ENSG00000258498.1; OTTHUMG00000171682.1; ENSG00000258498.2; ENSG00000258498.6; NCRNA00041; DIO3-AS1; ENSG00000258498.7; ENSG00000258498.8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -119.7281 non-coding 
CPAT coding probability 89.22% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
DIO3OS:3 no no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med
  2. Zhang (2015), Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and Competing Endogenous RNA Potential in Hepatocellular Carcinoma., PLoS ONE
  3. Hernandez (2007), Gene expression from the imprinted Dio3 locus is associated with cell proliferation of cultured brown adipocytes., Endocrinology
  4. Kester (2006), Regulation of type III iodothyronine deiodinase expression in human cell lines., Endocrinology
  5. Tierling (2006), High-resolution map and imprinting analysis of the Gtl2-Dnchc1 domain on mouse chromosome 12., Genomics
  6. Hernandez (2004), Complex organization and structure of sense and antisense transcripts expressed from the DIO3 gene imprinted locus., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HSP90AA1-4:3
3.1 lnc-HSP90AA1-9:3
4.0 DIO3OS:3
4.1 DIO3OS:3
5.0 DIO3OS:3
5.1 DIO3OS:3
5.2 DIO3OS:3