Transcript: DBH-AS1:2

Basic information

LNCipedia transcript ID: DBH-AS1:2 
LNCipedia gene ID: DBH-AS1
Location (hg38): chr9:133654195-133659794
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 5011 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT135333
Alternative gene names: BPR


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.5666 non-coding 
CPAT coding probability 92.03% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
DBH-AS1:2 yes no no no

Available literature

  1. Huang (2015), HBx-related long non-coding RNA DBH-AS1 promotes cell proliferation and survival by activating MAPK signaling in hepatocellular carcinoma., Oncotarget
  2. Gilbert (2000), Physical and cDNA mapping in the DBH region of human chromosome 9q34., Hum. Hered.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SARDH-1:3
4.0 DBH-AS1:2
4.1 DBH-AS1:2
5.0 DBH-AS1:2
5.1 DBH-AS1:2
5.2 DBH-AS1:2