Transcript: DANT1:3

Basic information

LNCipedia transcript ID: DANT1:3 
HGNC Gene Symbol: DANT1    
HGNC Full Gene Name: DXZ4 associated non-coding transcript 1, proximal
Ensembl Gene ID: ENSG00000229335
Ensembl Transcript ID: ENST00000415394
Location (hg38): chrX:115841010-115843050
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 280 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017007; ENST00000415394.1; RP1-241P17.1-002; OTTHUMT00000080579.1; NONHSAT138265
Alternative gene names: XLOC_008049; linc-AGTR2-2; ENSG00000229335.1; RP1-241P17.1; OTTHUMG00000033102.1; DANT1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -86.6698 non-coding 
CPAT coding probability 2.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DANT1:3 no no no no

Available literature

  1. Figueroa (2015), Two novel DXZ4-associated long noncoding RNAs show developmental changes in expression coincident with heterochromatin formation at the human (Homo sapiens) macrosatellite repeat., Chromosome Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PLS3-1:2
3.1 lnc-PLS3-1:2
4.0 DANT1:3
4.1 DANT1:3
5.0 DANT1:3
5.1 DANT1:3
5.2 DANT1:3