Transcript: CYTOR:94

Basic information

LNCipedia transcript ID: CYTOR:94 
HGNC Gene Symbol: CYTOR    
HGNC Full Gene Name: cytoskeleton regulator RNA
Ensembl Gene ID: ENSG00000222041
Ensembl Transcript ID: ENST00000409898
Location (hg38): chr2:87455476-87606739
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 560 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000409898; ENST00000409898.2; LINC00152-001; OTTHUMT00000330388.4; NONHSAT072147
Alternative gene names: ENSG00000222041; NCRNA00152; ENSG00000222041.5; LINC00152; OTTHUMG00000130273.9; ENSG00000222041.6; ENSG00000222041.10; MGC4677; CYTOR; ENSG00000222041.11


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -70.8379 non-coding 
CPAT coding probability 2.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CYTOR:94 no no no no

Available literature

  1. Van Grembergen (2016), Portraying breast cancers with long noncoding RNAs., Sci Adv
  2. Guo (2015), Competing endogenous RNA networks and gastric cancer., World J. Gastroenterol.
  3. Ji (2015), LINC00152 promotes proliferation in hepatocellular carcinoma by targeting EpCAM via the mTOR signaling pathway., Oncotarget
  4. Li (2015), Plasma long noncoding RNA protected by exosomes as a potential stable biomarker for gastric cancer., Tumour Biol.
  5. Li (2015), HULC and Linc00152 Act as Novel Biomarkers in Predicting Diagnosis of Hepatocellular Carcinoma., Cell. Physiol. Biochem.
  6. Müller (2015), Next-generation sequencing reveals novel differentially regulated mRNAs, lncRNAs, miRNAs, sdRNAs and a piRNA in pancreatic cancer., Mol. Cancer
  7. Qiu (2015), Long non-coding RNA LINC01296 is a potential prognostic biomarker in patients with colorectal cancer., Tumour Biol.
  8. Silva (2015), The Clinical Relevance of Long Non-Coding RNAs in Cancer., Cancers (Basel)
  9. Wang (2015), The long noncoding RNA LINC01207 promotes proliferation of lung adenocarcinoma., Am J Cancer Res
  10. Zhang (2015), Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and Competing Endogenous RNA Potential in Hepatocellular Carcinoma., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PLGLB2-1:4
3.1 lnc-PLGLB2-1:4
4.0 LINC00152:9
4.1 LINC00152:9
5.0 LINC00152:9
5.1 CYTOR:25
5.2 CYTOR:94

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