Transcript: CYTOR:125

Basic information

LNCipedia transcript ID: CYTOR:125 
LNCipedia gene ID: CYTOR
Location (hg38): chr2:87704443-87714232
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 397 bp
Exons: 6
Sources: NONCODE v4
Alternative transcript names: NONHSAT072159
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.7649 non-coding 
CPAT coding probability 0.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CYTOR:125 no no no no

Available literature

  1. Van Grembergen (2016), Portraying breast cancers with long noncoding RNAs., Sci Adv
  2. Guo (2015), Competing endogenous RNA networks and gastric cancer., World J. Gastroenterol.
  3. Ji (2015), LINC00152 promotes proliferation in hepatocellular carcinoma by targeting EpCAM via the mTOR signaling pathway., Oncotarget
  4. Li (2015), Plasma long noncoding RNA protected by exosomes as a potential stable biomarker for gastric cancer., Tumour Biol.
  5. Li (2015), HULC and Linc00152 Act as Novel Biomarkers in Predicting Diagnosis of Hepatocellular Carcinoma., Cell. Physiol. Biochem.
  6. Müller (2015), Next-generation sequencing reveals novel differentially regulated mRNAs, lncRNAs, miRNAs, sdRNAs and a piRNA in pancreatic cancer., Mol. Cancer
  7. Qiu (2015), Long non-coding RNA LINC01296 is a potential prognostic biomarker in patients with colorectal cancer., Tumour Biol.
  8. Silva (2015), The Clinical Relevance of Long Non-Coding RNAs in Cancer., Cancers (Basel)
  9. Wang (2015), The long noncoding RNA LINC01207 promotes proliferation of lung adenocarcinoma., Am J Cancer Res
  10. Zhang (2015), Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and Competing Endogenous RNA Potential in Hepatocellular Carcinoma., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PLGLB2-4:1
4.0 lnc-PLGLB2-4:1
4.1 LINC00152:42
5.0 LINC00152:42
5.1 CYTOR:76
5.2 CYTOR:125

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