Transcript: CYP4A22-AS1:1

Basic information

LNCipedia transcript ID: CYP4A22-AS1:1 
LNCipedia gene ID: CYP4A22-AS1
Location (hg38): chr1:47177597-47180373
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2037 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT003055
Alternative gene names: ncRNA-a3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -17.92 non-coding 
CPAT coding probability 3.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CYP4A22-AS1:1 no no no no

Available literature

  1. Ørom (2010), Long noncoding RNAs with enhancer-like function in human cells., Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PDZK1IP1-2:3
4.0 CYP4A22-AS1:1
4.1 CYP4A22-AS1:1
5.0 CYP4A22-AS1:1
5.1 CYP4A22-AS1:1
5.2 CYP4A22-AS1:1