Transcript: CTBP1-DT:28

Basic information

LNCipedia transcript ID: CTBP1-DT:28 
HGNC Gene Symbol: CTBP1-DT    
HGNC Full Gene Name: CTBP1 divergent transcript
Ensembl Gene ID: ENSG00000196810
Ensembl Transcript ID: ENST00000581398
Location (hg38): chr4:1250259-1255910
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5652 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000581398.1; CTBP1-AS1-004; OTTHUMT00000359479.1; NONHSAT094692
Alternative gene names: ENSG00000196810.4; CTBP1-AS1; OTTHUMG00000160166.2; CTBP1-AS2; MGC21675


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.5896 non-coding 
CPAT coding probability 51.10% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
CTBP1-DT:28 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C4orf42-1:4
4.0 CTBP1-AS2:8
4.1 CTBP1-AS2:8
5.0 CTBP1-AS2:8
5.1 CTBP1-DT:19
5.2 CTBP1-DT:28