Transcript: CSTF3-DT:20

Basic information

LNCipedia transcript ID: CSTF3-DT:20 
LNCipedia gene ID: CSTF3-DT
Location (hg38): chr11:33161657-33191596
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2060 bp
Exons: 4
Sources: NONCODE v4; Refseq - Dec 2014
Alternative transcript names: NONHSAT018691; NR_034027
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.0996 non-coding 
CPAT coding probability 9.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CSTF3-DT:20 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TCP11L1-1:3
4.0 CSTF3-AS1:2
4.1 CSTF3-AS1:2
5.0 CSTF3-AS1:2
5.1 CSTF3-DT:9
5.2 CSTF3-DT:20