Transcript: CSTF3-DT:16

Basic information

LNCipedia transcript ID: CSTF3-DT:16 
LNCipedia gene ID: CSTF3-DT
Location (hg38): chr11:33161626-33202153
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 9641 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000247151.2|ENCT00000065766.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 19.1155 non-coding 
CPAT coding probability 0.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CSTF3-DT:16 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 CSTF3-AS1:8
5.0 CSTF3-AS1:8
5.1 CSTF3-DT:5
5.2 CSTF3-DT:16