Transcript: COPG2IT1:2

Basic information

LNCipedia transcript ID: COPG2IT1:2 
HGNC Gene Symbol: COPG2IT1    
HGNC Full Gene Name: COPG2 imprinted transcript 1
RefSeq ID: NR_024086
Location (hg38): chr7:130543453-130546900
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3448 bp
Exons: 1
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_024086.2
Alternative gene names: COPG2IT1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
COPG2IT1:2 yes no no no

Available literature

  1. Yamasaki (2000), The novel gene, gamma2-COP (COPG2), in the 7q32 imprinted domain escapes genomic imprinting., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 COPG2IT1:2
5.1 COPG2IT1:2
5.2 COPG2IT1:2