Transcript: CNNM3-DT:13

Basic information

LNCipedia transcript ID: CNNM3-DT:13 
LNCipedia gene ID: CNNM3-DT
Location (hg38): chr2:96814947-96816253
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1307 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT072586
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -170.3514 non-coding 
CPAT coding probability 11.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CNNM3-DT:13 yes no no no

Available literature

  1. Lu (2016), Increased expression of long noncoding RNAs LOC100652951 and LOC100506036 in T cells from patients with rheumatoid arthritis facilitates the inflammatory responses., Immunol. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ANKRD23-2:2
4.0 lnc-ANKRD23-2:2
4.1 lnc-ANKRD23-2:2
5.0 lnc-ANKRD23-2:2
5.1 CNNM3-DT:3
5.2 CNNM3-DT:13